Table 5 Geologic time table of animal, plants, amoebae and fungi's contribution to the proteomics of M. leucophaeata

Amoeba (Dictyosteliidae): actin 18; probable malate dehydrogenase.

1070 (Wegener Parfrey et al. 2011)

1.8

1.8

Encephalitozoon cuniculi (protozoon parasite): ubiquitin.

1000 (Hedges 2002)

0.9

2.7

Starlet sea anemone (polyp): ribosomal subunit 40S-S3a.

655 (Wegener Parfrey et al. 2011)

0.9

3.6

Fission yeast (S. pombe): ribosomal subunit 60S-L7c; ADP-ribosylation factor 1 (Arf1).

600 (Wegener Parfrey et al. 2011)

1.8

5.4

Lancelet & worms: ribosomal subunit 40S-SA; cytoplasmic actin; actin 3; gelsolin-like protein 1; guanine nucleotide-binding protein; tubulin β-2 chain; ATP synthase, subunit α; phosphoenolpyruvate carboxykinase.

551 to 505 (Bagley 2013)

7.1

12.5

Bivalves: ribosomal subunit 40S-SA; ribosomal subunit 40S-S18; ribosomal subunit 40S-S19; guanine nucleotide-binding protein, subunit β; guanine nucleotide-binding protein G(o), subunit α; actin; myosin essential adductor muscle light chain; paramyosin; adductor muscle actin (precursor); myosin heavy chain.

approximately 510 (Kansas Geological Survey 2008)

8.9

21.4

Hydrozoa ( Hydra vulgaris; Podocoryne carnea): actin, non-muscle; actin 3.

approximately 505 (Cartwright et al. 2007)

1.8

23.2

Gastropoda: Lymnaea stagnalis: guanine nucleotide-binding protein G(q), subunit α; 2005) Biomphalaria glabrata; guanine nucleotide-binding protein, subunit β-2-like, Rack 1; Aplysia californica: 78 kDa glucose-regulated protein; Haliotis diversicolor: tropomyosin; Patella granatina: histone H2B, gonadal.

500 (Kansas Geological Survey 2005)

4.5

27.7

Cephalopoda: ribosomal subunit 40S-S26; enolase; myosin catalytic light chain LC-1; histone H2A.

500 to 440 ([PPT] Life and Geologic Time)

3.6

31.3

Echinodermata (Strongylocentrotus purpuratus): actin, cytoskeletal 1A; actin, muscle (precursor); major vault protein.

approximately 450 (Smith 1984)

2.7

34.0

Insects (Arthropoda, Hexopoda): ribosomal subunit 40S-S4; ribosomal subunit 60S-L5; ribosomal subunit 60S-L8; ribosomal subunit 60S-L17; actin; V-type proton ATPase catalytic subunit A.

400 (Grimaldi and Engel 2005)

5.4

39.4

Fruit fly (Drosophila melanogaster): ribosomal subunit 40S-S14; heat-shock 70 kDa protein cognate 3; Ca²⁺ transporting ATPase; spectrin β-chain; α-actinin, sarcomeric; actin, larval muscle; histone H3; 14-3-3 protein ε.

321 (Wegener Parfrey et al. 2011)

7.1

46.5

Fungi (Saccharomyces cerevisiae): ribosomal subunit 60S-L16a.

309 (Wegener Parfrey et al. 2011)

0.9

47.4

Amphibians (Xenopus tropicalis, Xenopus laevis): ribosomal subunit 40S-S13; ribosomal subunit 60S-L4b; actin, cytoplasmic 2; malate dehydrogenase, cytoplasmic; succinate dehydrogenase.

250 (Zhang et al. 2005a, b)

4.5

51.9

(Anthozoa, stony corals): histone H4.

240 (Waggoner 2000)

0.9

52.8

Elasmobranchii (rays): Na⁺/K⁺-ATPase; Ras-related protein O-Rab1.

190 (prehistoric sharks - megalodon, fossil teeth, shark attacks) (Pre-Historic Sharks)

1.8

54.6

Amphibians (salamander): T-complex protein 1, subunit α.

139 (Zhang et al. 2005a)

0.9

55.5

Teleosts (channel catfish): ribosomal subunit 40S-S6; ribosomal subunit 60S-L7a.

160 to 110 (Volff 2005)

1.8

57.3

Plantae (cruciferae, thale cress): proteasome subunit α type-5-A; ADP/ATP carrier protein 3.

127 (Wegener Parfrey et al. 2011)

1.8

59.1

Teleosts (Takifugu rubripes): ribosomal subunit 40S-S24.

80 to 60 (Volff 2005)

0.9

60.0

Goldfish: proteasome subunit α type-2.

49 to 46 (Wang et al. 2007)

0.9

60.9

Birds (chicken, Galliformes, Phasianidae): sarcoplasmic/endoplasmic reticulum ATPase 3; heat-shock 70 kDa protein; plastin-1; spectrin α chain, non-erythrocytic 1; heat-shock cognate protein HSP90-β; myosin-11; histone H2A.V; proteasome subunit α type-7; ATP synthase, subunit β precursor.

58 to 37 (Mlikovský 1989)

8.0

68.9

Decapoda (brine shrimp): actin, clone 205; elongation factor 1α.

40 (Baxeranis et al. 2006)

1.8

70.7

Mammals (house mouse): ribosomal subunit 40S-S16; AP-1 complex, subunit β-1; radixin; tubulin α-3 chain.

6.5 (Veyrunes et al. 2006)

3.6

74.3

Rabbit: endoplasmin.

6.5 (Branco et al. 2000)

0.9

75.2

Teleosts (Japanese medaka); actin, cytoplasmic 1 (β-actin).

6.0 to 5.4 (Takehana et al. 2003)

0.9

76.1

Rattus norvegicus: ribosomal subunit 40S-S27-like; ribosomal subunit 60S-L4; ribosomal subunit 60S-L5; ribosomal subunit 60S-L26; clathrin heavy chain 1; glyceraldehyde-3-phosphate dehydrogenase 2.

6 to 3.5 (Furano and Usdin 1995; Verneau et al. 1998)

5.4

81.5

Cow: ribosomal subunit 40S-S2; ribosomal subunit 40S-S7; ribosomal subunit 40S-S9; ribosomal subunit 40S-S17; peptidyl-prolyl cis-trans isomerase C (cyclophilin C).

1.4 (Mac Hugh et al. 1997)

4.5

86.0

Chimpanzee: Ras-related protein Rap-1b; tubulin-1A chain; eucaryotic initiation factor 4A-I.

0.9 to 0.86 (Won and Hey 2005)

2.7

88.7

Homo sapiens: ribosomal subunit 40S-S3; ribosomal subunit 40S-S5; ribosomal subunit 60S-L23a; α-amylase; glycogen phosphorylase; dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit STT3A; myosin-9.

0.2 to 015 (Reid and Hetherington 2010)

6.3

95.0

Dog (Canis lupus familiaris): ribosomal subunit 60S-L12.

0.032 (Germonpré et al. 2009)

0.9

95.9

Goat (Capra hircus): ribosomal subunit 40S-S18.

0.006 to 0.007 (www.ansi.okstate.edu/breeds/goats/)

0.9

96.8

Fungi (Puccinia graminis: stemrust): actin.

0.0033 (Kislev 1982)

0.9

97.7

Wild boar: transitional endoplasmic reticulum ATPase (TERA); trypsin.

0.005 to 0 (Hardjasasmita 1987)

1.8

99.5