Complete mitochondrial genome sequences of three rhombosoleid fishes and comparative analyses with other flatfishes (Pleuronectiformes)

Wang, Shu-Ying; Shi, Wei; Miao, Xian-Guang; Kong, Xiao-Yu

doi:10.1186/s40555-014-0080-9

Zoological Studies

Table 3 Features of the mitogenomes of three rhombosoleid fishes

From: Complete mitochondrial genome sequences of three rhombosoleid fishes and comparative analyses with other flatfishes (Pleuronectiformes)

	*Peltorhamphus novaezeelandiae*				*Colistium nudipinnis*				*Pelotretis flavilatus*
		Start	Stop			Start	Stop			Start	Stop
Gene	Position	anticodon		I-R*	Position	anticodon		I-R	Position	anticodon		I-R
tRNA ^Phe	1 to 68	GAA		0	1 to 68	GAA		0	1 to 69	GAA		0
12S rRNA	69 to 1,010			0	69 to 1,010			0	70 to 1,016			0
tRNA ^Val	1,011 to 1,081	TAC		0	1,011 to 1,081	TAC		0	1,017 to 1,087	TAC		0
16S rRNA	1,082 to 2,795			1	1,082 to 2,792			1	1,088 to 2,816			0
tRNA ^Leu( UUA ⁾	2,797 to 2,870	TAA		0	2,794 to 2,867	TAA		0	2,817 to 2,890	TAA		28
ND1	2,871 to 3,845	ATG	TAA	5	2,868 to 3,842	ATG	TAA	5	2,919 to 3,866	ATG	TAA	6
tRNA ^Ile	3,851 to 3,920	GAT		−1	3,848 to 3,917	GAT		−1	3,873 to 3,942	GAT		−1
tRNA ^Gln	3,920 to 3,990	TTG		−1	3,917 to 3,987	TTG		−1	3,942 to 4,013	TTG		−1
tRNA ^Met	3,990 to 4,059	CAT		0	3,987 to 4,055	CAT		1	4,013 to 4,081	CAT		1
ND2	4,060 to 5,109	ATG	TAA	−1	4,057 to 5,106	ATG	TAA	−1	4,083 to 5,132	ATG	TAA	−1
tRNA ^Trp	5,109 to 5,179	TCA		1	5,106 to 5,176	TCA		1	5,132 to 5,202	TCA		1
tRNA ^Ala	5,181 to 5,249	TGC		1	5,178 to 5,246	TGC		1	5,204 to 5,272	TGC		1
tRNA ^Asn	5,251 to 5323	GTT		0	5,248 to 5,320	GTT		0	5,274 to 5,346	GTT		0
O_L	5,324 to 5,361			−4	5,321 to 5,364			−4	5,347 to 5,390			−4
tRNA ^Cys	5,358 to 5,417	GCA		−1	5,361 to 5,420	GCA		−1	5,387 to 5,446	GCA		−1
tRNA ^Tyr	5,417 to 5,486	GTA		1	5,420 to 5,489	GTA		1	5,446 to 5,515	GTA		1
COI	5,488 to 7,038	GTG	TAA	0	5,491 to 7,041	GTG	TAA	0	5,517 to 7,067	GTG	TAA	0
tRNA ^Ser (UCA)	7,039 to 7,109	TGA		3	7,042 to 7,112	TGA		3	7,068 to 7,138	TGA		3
tRNA ^Asp	7,113 to 7,181	GTC		6	7,116 to 7,184	GTC		6	7,142 to 7,210	GTC		18
COII	7,188 to 7,880	ATG	TAA	7	7,191 to 7,881	ATG	T-	0	7,229 to 7,919	ATG	T-	0
tRNA ^Lys	7,888 to 7,961	TTT		1	7,882 to 7,955	TTT		1	7,920 to 7,993	TTT		1
ATP8	7,963 to 8,130	ATG	TAA	−10	7,957 to 8,124	ATG	TAA	−10	7,995 to 8,162	ATG	TAA	−10
ATP6	8,121 to 8,804	ATG	TAA	−1	8,115 to 8,798	ATG	TAA	−1	8,153 to 8,836	ATG	TAA	−1
COIII	8,804 to 9,589	ATG	TAA	−1	8,798 to 9,583	ATG	TAA	−1	8,836 to 9,621	ATG	TAA	−1
tRNA ^Gly	9,589 to 9,660	TCC		−3	9,583 to 9,654	TCC		−3	9,621 to 9,691	TCC		−3
ND3	9,658 to 10,011	ATA	TAG	−2	9,652 to 10,005	ATA	TAG	−2	9,689 to 10,042	ATA	TAG	−2
tRNA ^Arg	10,010 to 10,078	TCG		0	10,004 to 10,072	TCG		0	10,041 to 10,109	TCG		0
ND4L	10,079 to 10,375	ATG	TAA	−7	10,073 to 10,369	ATG	TAA	−7	10,110 to 10,406	ATG	TAA	−7
ND4	10,369 to 11,749	ATG	T-	0	10,363 to 11,743	ATG	T-	0	10,400 to 11,780	ATG	T-	0
tRNA ^His	11,750 to 11,818	GTG		0	11,744 to 11,812	GTG		0	11,781 to 11,849	GTG		0
tRNA ^Ser (AGC)	11,819 to 11,885	GCT		4	11,813 to 11,879	GCT		4	11,850 to 11,916	GCT		4
tRNA ^Leu (CUA)	11,890 to 11,962	TAG		0	11,884 to 11,956	TAG		0	11,921 to 11,993	TAG		1
ND5	11,963 to 13,801	ATG	TAA	−4	11,957 to 13,795	ATG	TAG	−4	11,995 to 13,845	ATG	TAA	−4
ND6	13,798 to 14,319	ATG	TAG	0	13,792 to 14,313	ATG	TAG	0	13,842 to 14,363	ATG	TAG	1
tRNA ^Glu	14,320 to 14,388	TTC		4	14,314 to 14,382	TTC		4	14,365 to 14,438	TTC		−2
Cytb	14,393 to 15,533	ATG	T-	0	14,387 to 15,527	ATG	T-	0	14,437 to 15,577	ATG	T-	0
tRNA ^Thr	15,534 to 15,607	TGT		−1	15,528 to 15,599	TGT		−1	15,578 to 15,649	TGT		−1
tRNA ^Pro	15,607 to 15,677	TGG		0	15,599 to 15,669	TGG		0	15,649 to 15,719	TGG		0
D-loop	15,678 to 16,889				15,670 to 16,588				15,720 to 16,937

I-R*, intergenic region; non-coding bases between the feature on the same line and the line below, with a negative number indicating an overlap.

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