Complete mitochondrial genome sequences of three rhombosoleid fishes and comparative analyses with other flatfishes (Pleuronectiformes)

Shu-Ying Wang; Wei Shi; Xian-Guang Miao; Xiao-Yu Kong

doi:10.1186/s40555-014-0080-9

Zoological Studies

Table 2 Information of the mitogenomes sequences of 17 flatfishes used in present study

From: Complete mitochondrial genome sequences of three rhombosoleid fishes and comparative analyses with other flatfishes (Pleuronectiformes)

Species	Accession number	Genome		Protein-coding gene			Non-coding region
		Length (bp)	AT (%)	Length (bp)	AT skew	GC skew	Control region				O_Lregion
		Length (bp)	AT (%)	Length (bp)	AT skew	GC skew	Length	Repeat site	Copy number	Size	Length	Block
Cynoglossus semilaevis	EU366230	16,731	60.59	11,416	0.20	−0.57	982	5′	11.9	32	44	CCGGC
Cynoglossus abbreviatus	NC_014881	16,417	60.35	11,412	0.23	−0.61	661	5′	4.7	18	41	CCGGC
Solea senegalensis	AB270760	16,659	54.63	11,430	0.17	−0.63	1,017	3′	8.1	8	46	CCGGG
Zebrias zebrinus ^a	JQ700100	16,758	54.81	11,438	0.17	−0.64	1,078	-	-	-	50	CCAGC
Peltorhamphus novaezeelandiae	JQ639065	16,889		11,429	0.03		1,212	3′	6.1	7	43	CTGGC
								3′	39.3	7
Colistium nudipinnis	JQ639063	16,588	54.33	11,435	−0.02	−0.45	919	3′	7	17	49	CTGGC
Pelotretis flavilatus	KC554065	16,937	56.08	11,427	0.10	−0.51	1,218	3′	2.9	145	49	CTGGC
Verasper variegatus	NC_007939	17,273	54.69	11,433	0.12	−0.57	1,572	3′	8.3	61	47	CCGGC
Verasper moseri	NC_008461	17,588	55.06	11,435	0.13	−0.56	1,889	3′	13.3	61	46	CCGGC
Platichthys stellatus	NC_010966	17,103	53.21	11,438	0.12	−0.50	1,400	3′	3.2	120	48	CCGGC
Kareius bicoloratus ^b	NC_003176	15,973	53.26	11,436	0.13	−0.51	-	-	-	-	46	CCGGC
Hippoglossus stenolepis	NC_009710	17,841	54.29	11,443	0.17	−0.55	2,135	3′	17.4	61	48	CCGGC
Hippoglossus hippoglossus	NC_009709	17,546		11,443	0.16		1,841	3′	3	11	48	CCGGC
								3′	12.4	61
Reinhardtius hippoglossoides	NC_009711	18,017	54.9	11,443	0.12	−0.55	2,312	3′	20.3	61	48	CCGGC
Paralichthys olivaceus	AB028664	17,090	53.54	11,428	0.16	−0.55	1,400	3′	5.4	74	48	CCGGT
Scophthalmus maximus	EU419747		55.78	11,506		−0.56	1,658	3′	61.4	12	45	CCGGT
								3′	6.4	11
Psettodes erumei	NC_020032.1		53.61	11,427		−0.71	1,601	5′	8.7	56	45	CCGGC
								3′	23.3	8

^aThere was no repeat units in the control region of Zebrias zebrinus; ^bthe control region of Kareius bicoloratus was incomplete. 3′ or 5′ indicates that the repeat region is at the 3′- or 5′-end of the control region, respectively.

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