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Table 1 List of taxa and the DNA sequences of which were included in the phylogenetic analyses

From: The phylogenetic position of the enigmatic Atlantic forest-endemic spiny mouse Abrawayaomys (Rodentia: Sigmodontinae)

Tribe

Species

IRBP

Cyt b

Abrotrichini

Abrothrix longipilis

AY163577

U03530

Abrotrichini

Chelemys macronyx

AY277441

U03533

Abrotrichini

Geoxus valdivianus

AY277448

AY275116

Abrotrichini

Notiomys edwardsii

AY163602

U03537

Abrotrichini

Pearsonomys annectens

AY851749

AF108672

Akodontini

‘Akodon’ serrensis

EF626799

AY273908

Akodontini

Akodon azarae

AY163578

DQ444328

Akodontini

Bibimys chacoensis/labiosus

AY277435

DQ444329

Akodontini

Blarinomys breviceps

AY277437

AY275112

Akodontini

Brucepattersonius soricinus

AY277439

AY277486

Akodontini

Deltamys kempi

AY277444

AY195862

Akodontini

Juscelinomys huanchacae

AY277453

AF133667

Akodontini

Kunsia tomentosus

AY277455

AY275120

Akodontini

Lenoxus apicalis

AY277456

U03541

Akodontini

Necromys lasiurus

AY277459

AY273912

Akodontini

Oxymycterus nasutus

AY277468

EF661854

Akodontini

Scapteromys tumidus

AY163637

AY275133

Akodontini

Thalpomys cerradensis

AY277481

AY273916

Akodontini

Thaptomys nigrita

AY277482

AF108666

Ichthyomyini

Rheomys raptor

AY163635

-

Incertae sedis

Abrawayaomys ruschii

JX949185

JX949189

Incertae sedis

Andinomys edax

JQ434400

AF159284

Incertae sedis

Chinchillula sahamae

JQ434409

JQ434422

Incertae sedis

Delomys sublineatus

AY163582

AF108687

Incertae sedis

Euneomys chinchilloides

AY277446

AY275115

Incertae sedis

Irenomys tarsalis

AY163587

U03534

Incertae sedis

Juliomys pictipes

AY163588

AF108688

Incertae sedis

Neomicroxus latebricola

QCAZ4160

QCAZ4160

Incertae sedis

Neotomys ebriosus

HM061605

HM061604

Incertae sedis

Punomys kofordi

JQ434414

JQ434426

Oryzomyini

Aegialomys xanthaeolus

GQ178247

EU579479

Oryzomyini

Amphinectomys savamis

AY163579

EU579480

Oryzomyini

Cerradomys scotti

EU649040

EU579482

Oryzomyini

Drymoreomys albimaculatus

EU649042

EU579487

Oryzomyini

Eremoryzomys polius

AY163624

EU579483

Oryzomyini

Euryoryzomys macconnelli

AY163620

EU579484

Oryzomyini

Handleyomys intectus

AY163584

EU579490

Oryzomyini

Holochilus brasiliensis

AY163585

EU579496

Oryzomyini

Hylaeamys megacephalus

AY163621

EU579499

Oryzomyini

Lundomys molitor

AY163589

EU579501

Oryzomyini

Melanomys caliginosus

EU649052

EU340020

Oryzomyini

Microakodontomys transitorius

EU649054

-

Oryzomyini

Microryzomys minutus

AY163592

AF108698

Oryzomyini

Neacomys spinosus

AY163597

EU579504

Oryzomyini

Nectomys squamipes

AY163598

EU340012

Oryzomyini

Nephelomys albigularis

EU649057

EU579505

Oryzomyini

Nesoryzomys fernandinae

EU649058

EU579506

Oryzomyini

Oecomys bicolor

AY163604

EU579509

Oryzomyini

Oligoryzomys fulvescens

AY163611

DQ227457

Oryzomyini

Oreoryzomys balneator

AY163617

EU579510

Oryzomyini

Oryzomys palustris

AY163623

EU074639

Oryzomyini

Pseudoryzomys simplex

AY163633

EU579517

Oryzomyini

Scolomys ucayalensis

AY163638

EU579518

Oryzomyini

Sigmodontomys alfari

AY163641

EU340016

Oryzomyini

Sooretamys angouya

AY163616

EU579511

Oryzomyini

Tanyuromys aphrastus

JF693878

JF693877

Oryzomyini

Transandinomys talamancae

AY163627

EU579514

Oryzomyini

Zygodontomys brevicauda

AY163645

EU579521

Phyllotini

Andalgalomys pearsoni

EU649038

AF159285

Phyllotini

Auliscomys pictus

AY277434

JQ434420

Phyllotini

Calomys lepidus

AY163580

EU579473

Phyllotini

Eligmodontia typus

AY277445

AF108692

Phyllotini

Galenomys garleppi

JQ434410

JQ434423

Phyllotini

Graomys griseoflavus

EU649037

EU579472

Phyllotini

Loxodontomys micropus

AY277457

AY275122

Phyllotini

Phyllotis xanthopygus

AY163632

AY275128

Phyllotini

Salinomys delicatus

JQ434415

EU377608

Phyllotini

Tapecomys primus

JQ434416

AF159287

Phyllotini

Phyllotini n. gen.

JQ434417

JQ434425

Reithrodontini

Reithrodon auritus

AY163634

EU579474

Sigmodontini

Sigmodon alstoni

EU635698

AF293397

Thomasomyini

Aepeomys lugens

DQ003722

-

Thomasomyini

Chilomys instans

-

AF108679

Thomasomyini

Rhagomys longilingua/rufescens

DQ003723

AY206770

Thomasomyini

Rhipidomys macconnelli

AY277474

AY275130

Thomasomyini

Thomasomys aureus

AY277483

U03540

Wiedomyini

Wiedomys pyrrhorhinos

AY163644

EU579477

Outgroup

Arvicola terrestris

AY277407

AY275106

Cricetus cricetus

AY277410

AY275109

Microtus socialis

FM162055

AY513830

Neotoma albigula

AY277411

AF108704

Nyctomys sumichrasti

AY163603

AY195801

Phodopus sungorus

AY163631

JN015007

Scotinomys xerampelinus

AY277416

AF108706

Tylomys nudicaudus

AY163643

DQ179812

  1. Sequences of the genera Bibimys and Rhagomys of each gene were gathered from different species. GenBank accession numbers for each gene (IRBP and Cyt b) are indicated in the last two columns. Tribal assignations follow D'Elía et al. 2007 (see also D'Elía and Pardiñas 2007) and results of the present study.