Transcriptional profiling of adult Drosophila antennae by high-throughput sequencing

Shiao, Meng-Shin; Fan, Wen-Lang; Fang, Shu; Lu, Mei-Yeh Jade; Kondo, Rumi; Li, Wen-Hsiung

doi:10.1186/1810-522X-52-42

Zoological Studies

Table 4 Sex-biased chemosensory genes

From: Transcriptional profiling of adult Drosophila antennae by high-throughput sequencing

	Gene name	Gene ID	Shiao et al.						Kopp et al.
			Male (FPKM)	Female (FPKM)	FC (F/M)	p	FDR	qRT-PCR (FC)	Expression level
Shiao et al. only	Gr2a	FBgn0027796	0.63	0.20	0.32	0.01	0.58	NA¹	NA²
	Obp19c	FBgn0031111	12.57	18.45	1.47	0.01	0.55	1.45	Low
	Obp44a	FBgn0033268	85.73	115.43	1.35	0.03	1.00	1.24	High
	Obp49a	FBgn0050052	27.64	36.45	1.32	0.03	1.00	1.37	High
	Obp56e	FBgn0034471	10.30	16.05	1.56	0.03	1.00	1.77	Medium
	Obp57a	FBgn0043535	87.76	60.06	0.68	0.00	0.17	0.69	High
	Obp99b	FBgn0039685	3.18	6.17	1.94	0.02	0.77	1.50	Low
	Or59b	FBgn0034865	48.20	76.20	1.58	0.00	0.02	1.40	Medium
	Or65b	FBgn0041624	66.81	51.96	0.78	0.02	0.82	0.74	Low
	Or98b	FBgn0039582	0.43	0.14	0.34	0.03	1.00	0.88	NA²
Overlap	Gr21a	FBgn0041250	13.46	17.85	1.33	0.03	1.00	1.31	High
	Obp19a	FBgn0031109	2093.55	2986.89	1.43	0.04	1.00	1.42	High
	Obp19b	FBgn0031110	46.05	70.89	1.54	0.00	0.04	1.29	High
	Obp22a	FBgn0043539	0.18	0.00	0.00	0.05	1.00	NA¹	Low
	Or47b	FBgn0026385	88.46	52.12	0.59	0.00	0.00	0.57	High
	Or67d	FBgn0036080	46.65	23.90	0.51	0.00	0.00	0.51	High
	Or7a	FBgn0030016	27.98	39.62	1.42	0.00	0.23	1.32	Medium
	Or9a	FBgn0030204	36.24	54.41	1.50	0.00	0.04	1.45	Medium
Kopp et al. only	Gr64f	FBgn0052255	11.93	16.33	1.37	0.14	1.00	1.26	Medium
	Obp69a	FBgn0011279	5132.32	3815.70	0.74	0.12	1.00	0.69	High
	Obp84a	FBgn0011282	1832.46	1764.42	0.96	0.81	1.00	0.93	High
	Or13a	FBgn0030715	13.62	16.36	1.20	0.21	1.00	1.22	Low
	Or22b	FBgn0026397	71.33	84.25	1.18	0.11	1.00	1.16	Medium
	Or2a	FBgn0023523	8.33	9.94	1.19	0.29	1.00	0.85	Low
	Or35a	FBgn0028946	19.73	21.75	1.10	0.47	1.00	1.14	High
	Or42b	FBgn0033043	140.30	168.79	1.20	0.07	1.00	1.19	High
	Or82a	FBgn0041621	9.44	10.55	1.12	0.51	1.00	1.10	Medium
	Or85a	FBgn0037576	10.55	13.78	1.31	0.17	1.00	1.16	Medium
	Or85c	FBgn0037591	2.92	3.64	1.25	0.37	1.00	0.82	Low
	Or92a	FBgn0038798	127.15	144.45	1.14	0.21	1.00	1.08	Medium

Sex-biased genes identified in this study (Shiao et al. 2012) and in Kopp et al. (2008) and overlap between two studies. FC, fold changes of fragments per kilobase of exon per million fragments mapped (FPKM) values and qRT-PCR results between females (F) and males (M); FDR, false discovery rate; NA¹, fold change was too small based on sequencing results, and we therefore did not design probes for the qRT-PCR analysis; NA², not detected by Kopp et al.

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