Open Access

Trophic structure of the pelagic food web in the East China Sea

  • Mei-Ling Bai1, 2Email author,
  • Fan-Sian Lin1,
  • Yu-Ching Lee1,
  • Gwo-Ching Gong3 and
  • Chih-hao Hsieh1, 2, 4
Zoological Studies201554:7

DOI: 10.1186/s40555-014-0089-0

Received: 16 December 2013

Accepted: 16 December 2014

Published: 9 January 2015



Trophic structure and trophic transfer efficiency are among the most fundamental characteristics of an ecosystem. They characterize the transfer of nutrient and energy and are crucial in estimating the yield of harvestable biomass. In this study, we investigated the regulation of trophic structure (phytoplankton, zooplankton, and larval fish abundance) and biomass ratio of zooplankton to phytoplankton (as an indicator of transfer efficiency) in the East China Sea, one of the largest marginal seas in the world and an important fishing ground.


The results showed that when sea surface temperature was below 25°C, temperature co-acted with resource availability (zooplankton for larval fish and phytoplankton for zooplankton) in determining the trophic structure. When sea surface temperature was above 25°C, resource availability dominated the regulation of trophic structure. Biomass ratio of zooplankton to phytoplankton decreased with increasing phosphate concentration.


Our study suggested that the trophic structure of the East China Sea might be controlled by bottom-up processes, and this control is mediated by temperature.


Bottom-up control Top-down control Transfer efficiency Phytoplankton Zooplankton Fish Temperature Nutrient status East China Sea


The trophic structure organizes the biological components of an ecosystem and channels the flow of nutrient and energy; thus, its regulation is a central issue in ecological research (Ware and Thomson 2005; Casini et al. 2008; Llope et al. 2012). In some marine ecosystems, the biomass of each trophic level is largely determined by available resources, suggesting a bottom-up control (e.g., Iverson 1990; Ware and Thomson 2005; Chassot et al. 2007), whereas in other marine ecosystems, the predator-prey interaction at higher trophic levels cascades down to the lower ones, demonstrating a top-down process (e.g., Frank et al. 2005; Daskalov et al. 2007; Casini et al. 2008). Actually, both processes could act simultaneously in an ecosystem, and the balance of bottom-up versus top-down control might depend on the ecosystem's state and integrity (Hunter and Price 1992; Gripenberg and Roslin 2007).

In addition to the direction of trophic interactions, the strength of these interactions, characterized by trophic transfer efficiency, is crucial for understanding many ecological processes (Pauly et al. 1998). Trophic transfer efficiency describes the proportion of prey production that is converted to predator production. It may influence trophic structure and food chain length (Hairston and Hairston 1993; Post 2002) and is necessary for estimating fishery production and the amount of carbon transfer (Pauly et al. 1998; Richardson and Jackson 2007). Therefore, great research efforts have been devoted to understand the regulation of trophic transfer efficiency, and the factors proposed include environmental conditions such as temperature, light or nutrients (Dickman et al. 2008; Davis et al. 2010; Hoekman 2010), the indirect effect from a third trophic level (bottom-up or top-down cascade) (Hairston and Hairston 1993; Dickman et al. 2008), and the composition, diversity and structure of the trophic levels in issue (Mallin and Paerl 1994; Ye et al. 2013).

Here, we investigated the trophic structure in the East China Sea (ECS), one of the largest marginal seas in the world. The ECS consists of a broad continental shelf bordered by China Mainland, Taiwan Island, Japanese Archipelago, and Korean Peninsula and is characterized by a complex hydrographic system with highly seasonal dynamics (Ichikawa and Beardsley 2002; Takahashi and Morimoto 2013). Parallel to the eastern edge of the ECS, the Kuroshio Current flows northwards year round; along the China coast, the southward China Coastal Current dominates when the northeastern monsoon prevails, and the northward Taiwan Strait Warm Current enters from the south when the southwestern monsoon governs. Freshwater discharge from Changjiang at the northwest of the ECS and the Kuroshio upwelling at the southeast of the ECS are the main nutrient sources for the region (Liu et al. 1992; Gong et al. 2003). The ECS ever supported a productive fishery and rich biodiversity but has suffered heavy overfishing, eutrophication, and other disturbances in the past decades (Chen et al. 1997; Li et al. 2009).

Extensive studies have investigated the spatiotemporal variation in the abundance or composition of larval fish (Okazaki and Nakata 2007; Hsieh et al. 2011; Lefébure et al. 2013), zooplankton (e.g., Liao et al. 2006; Lan et al. 2008; Tseng et al. 2008), and phytoplankton (e.g., Gong et al. 2006; Liu et al. 2010; Gong et al. 2011) in the ECS. Many of these previous studies used the abundance of neighboring trophic levels to explain the variation of the focal study group, but the multi-level trophic interactions and the factors regulating them remained to be investigated. Furthermore, many studies focused on a specific season or a confined area in the ECS, and information about the overall pattern of this highly variable ecosystem was scarce. In this study, we analyzed the trophic interactions between larval fish, zooplankton, and phytoplankton using a dataset covering the entire ECS and comprised of data from different seasons. The main objective is to answer (1) whether the trophic structure of the ECS is controlled by a top-down or bottom-up process and how the processes are mediated by temperature, and (2) which factors may influence the trophic transfer efficiency from phytoplankton to zooplankton in the ECS.


Sample collection and data treatment

Biological samples and corresponding environmental data were collected in seven cruises between 2007 and 2010 over the ECS (Figure 1, Additional file 1: Table S1). Due to constraints of weather and ship time, not all stations were sampled during each cruise. In total, 120 sets of samples were used in the analyses. For collecting larval fishes and zooplankton, an ORI net (Omori 1965) with a mesh size of 330 μm and a mouth diameter of 160 cm was towed obliquely from near the bottom to the sea surface. The volume of filtered water per tow was obtained from readings of a flowmeter attached to the net. At each sampling station, water temperature and salinity along the vertical profile were recorded with a CTD profiler (SBE 9/11 plus, SeaBird Inc., Bellevue, WA, USA). Seawater samples were taken using Go-Flo bottles at four to six depths spanning the water column. From these samples, concentrations of chlorophyll-a, nitrate (NO3), nitrite (NO2), ammonium (NH4), phosphate (PO4), and silicate (SiO3) were analyzed according to the standard methods (Gong et al. 2003).
Figure 1

Location of sampling stations in the East China Sea.

Larval fishes were counted and standardized to per cubic meter. The majority of larval fishes sampled in plankton nets are in very early stages of their development; therefore, their density can be used as a rough proxy for the abundance of spawning adults (Hsieh et al. 2009). We did not convert larval fish density to carbon biomass, as we had no adequate information about the length distribution and the weight-length relationship of larval fish, which are necessary for the conversion. The zooplankton settled volume was determined using the displacement method (Ballón et al. 2011). To exclude carnivorous zooplankton from the analyses, the samples were digitized with the ZooScan integrated system, and the scanned images were manually classified to calculate the volume percentage of chaetognaths and jellyfishes (Ye et al. 2011; Chang et al. 2012; García-Comas et al. 2013). The displacement volume of each sample was then modified by multiplying a factor of (1 − percentage of carnivorous zooplankton) and then converted to carbon biomass based on the regression formula from the literature (Wiebe 1988; Sánchez and Olaso 2004). Chlorophyll-a concentration was averaged over the towing depth and converted to carbon biomass using a carbon:chlorophyll-a ratio of 30 (Geider 1987). The abundance of larval fish and the biomasses of zooplankton and phytoplankton were log-transformed prior to analyses. Concentrations of dissolved inorganic nitrogen (DIN, sum of NO3, NO2, and NH4), PO4 and SiO3 were averaged over the towing depth to indicate the nutrient status of each station. Sea surface temperature (SST) and surface salinity (SSS) were adopted to indicate the physical features of the water.

The log-transformed ratio of zooplankton biomass to phytoplankton biomass (Z:P ratio) was calculated as an indicator of the trophic transfer efficiency from phytoplankton to zooplankton. The actual trophic transfer efficiency, defined as the production ratio of predator versus prey, is very difficult to derive in natural marine ecosystems. Therefore, the biomass ratio of adjacent trophic levels has been used to infer the trophic transfer efficiency (Gaedke and Straile 1994), despite that biomass ratios may differ from production ratios and biomass development of different trophic levels may not be perfectly synchronized. A recent work, using the shipboard incubation method to measure the production of zooplankton and phytoplankton in the ECS, has proved that there is indeed a very strong correlation between biomass ratio and production ratio for the two tropic levels (Su, in preparation).

Data analysis

We applied mixed-effects models to investigate which factors may affect the abundance of each trophic level and the Z:P ratio. For the larval fish density, we used the biomass of zooplankton (food for fish), SST and SSS as fixed-effect variables. For the biomass of zooplankton, we used both the larval fish density (proxy of predation on zooplankton) and the biomass of phytoplankton (food for zooplankton) as well as SST and SSS as fixed-effect variables. For the biomass of phytoplankton, we used the biomass of zooplankton (proxy of predation on phytoplankton), nutrient status (DIN, PO4, and SiO3, which represent resources for phytoplankton), as well as SST and SSS as fixed-effect variables. For the Z:P ratio, we used larval fish density, SST, SSS, and nutrient status as fixed-effect variables. We considered sampling cruise as a random effect on both intercept and slope in all analyses to account for variation among cruises, such as seasonal effects.

As ecological relationships might show an abrupt change which could indicate a change in underlying mechanisms, we used piecewise regression analysis to detect potential discontinuities in univariate models prior to multivariate analyses (Toms and Lesperance 2003; Casini et al. 2009). Both the mixed-effects piecewise regression and generalized linear mixed-effects model (GLMM) (Bolker et al. 2009) were applied to model the relationship between each response variable and each predictor. Fits of the two models were then compared based on Akaike's information criterion (AIC) (Akaike 1974). A reduction of 10 units or more in AIC values is generally considered as a significant improvement of the model fit (Bolker et al. 2009). Therefore, we treated a relationship as segmented when the piecewise model had an AIC value of at least 10 units lower than the linear model (ΔAIC ≥ 10), and conducted the following analyses for the specific response variable in groups delineated by the point of discontinuity estimated by the piecewise model with best fit.

We then used multivariate GLMMs with normal distribution and identity link function to identify the variable combinations that could best model the biomass of each trophic level and trophic efficiency. For each response variable, all corresponding fixed-effect variables were included in the initial model, and backward stepwise selection was applied. The best models were determined based on AIC. The piecewise regression analysis and GLMMs were performed with NLMIXED and GLIMMIX procedures, respectively, in SAS 9.3 (SAS Institute Inc., Cary, NC, USA).

We further examined how much variance of the abundance/biomass of each trophic level could be explained by the abundance/biomass of other trophic levels by calculating the marginal R 2 GLMM (Nakagawa and Schielzeth 2013). Although the AIC value and other information criteria are useful for comparing and selecting models, they provide no information about the absolute model fit and are not comparable between different datasets (Burnham et al. 2011). A recent statistical development offers a method for calculating the variance explained by the fixed effect (marginal R 2 GLMM) and comparing cross-datasets model fit for GLMMs (Nakagawa and Schielzeth 2013). We constructed GLMMs for the abundance/biomass of each trophic level using only the abundance of one of the other trophic levels as the fixed effect, and then calculated the marginal R 2 GLMM as an indicator of the strength of trophic interactions. The R 2 GLMM was calculated using the MuMIn package in R (R Core Team).


In univariate analyses, the variation of larval fish density could be best described by the piecewise model of SST (Table 1). Larval fish density increased with increasing SST when SST was lower than 25.3°C, but decreased with increasing SST when SST was higher (Figure 2). For phytoplankton biomass, abrupt changes occurred in its relationships with SST (at SST = 24.8°C), SSS (at SSS = 32.0 psu), and DIN (at DIN = 10.4 μM), and the piecewise model based on SST had the best fit among all models. Therefore, we built multivariate GLMMs for larval fish density and phytoplankton biomass in the temperature ranges above and below 25°C, separately. However, for the zooplankton biomass and the Z:P ratio, no piecewise model performed significantly better than the corresponding linear model according to the criterion of ΔAIC ≥ 10. Thus, for the zooplankton biomass and the Z:P ratio, we used the complete dataset. Nevertheless, we additionally modeled zooplankton biomass in the two temperature ranges for comparison purposes.
Table 1

Comparison of linear models and piecewise models



AIC linear model

AIC piecewise model

Cut point

Larval fish











Zooplankton biomass















Phytoplankton biomass





























Zooplankton/phytoplankton ratio

























Larval fish density




The relationships between the abundance/biomass of each trophic level and each predictor variable were analyzed using generalized linear mixed-effects models and mixed-effects piecewise regression models, and the AIC values of the two approaches were compared.

aThe piecewise model had a much better fit compared to the linear model (ΔAIC ≥ 10), indicating a change of relationship at the cut point.

Figure 2

Relationships between the abundance/biomass of each trophic level and SST. (a) Larval fish abundance and SST, (b) zooplankton biomass and SST, and (c) phytoplankton biomass and SST. The trend lines were based on piecewise regression with random effects in (a) and (c), and on generalized linear mixed models in (b).

The results of multivariate GLMMs showed that bottom-up forces played an important role in shaping the trophic structure of the ECS (Table 2). In both temperature ranges, the biomass of phytoplankton was determined only by physical and nutritional variables, the zooplankton biomass increased with increasing phytoplankton biomass, and the larval fish density increased with increasing zooplankton biomass. The larval fish density was positively correlated with both zooplankton biomass and SST when SST was below 25°C. When SST was above 25°C, only zooplankton biomass influenced larval fish density. Zooplankton biomass could be best explained by phytoplankton biomass when using the complete dataset, although, when SST was below 25°C, the model including the effect of SST in addition to phytoplankton biomass offered a better fit to zooplankton biomass than the model with phytoplankton biomass alone. For the Z:P ratio, only the negative effect of PO4 concentration was included in the final model.
Table 2

Generalized linear mixed-effects models for the abundance/biomass of each trophic level and the Z:P ratio


AIC of final model

Variables in final model





Larval fish (SST ≤ 25°C)



 ~ Zooplankton, SST, SSS

Zooplankton biomass











Larval fish (SST > 25°C)



 ~ Zooplankton, SST, SSS

Zooplankton biomass





Zooplankton (full range)



 ~ Fish, phytoplankton SST, SSS

Phytoplankton biomass





Zooplankton (SST ≤ 25°C)



 ~ Fish, phytoplankton SST, SSS

Phytoplankton biomass











Zooplankton (SST > 25°C)



 ~ Fish, phytoplankton SST, SSS

Phytoplankton biomass





Phytoplankton (SST ≤ 25°C)



 ~ Zooplankton, SST, SSS, nutrients


















Phytoplankton (SST > 25°C)



 ~ Zooplankton, SST, SSS, nutrients


















Zooplankton/phytoplankton ratio (full range)



 ~ Fish, SST, SSS, nutrients






When SST was below 25°C, about 9% of the variation in larval fish density could be explained by zooplankton biomass, and about 5% of the variation in zooplankton biomass could be explained by phytoplankton biomass (Figure 3). When SST was above 25°C, the explained variation of larval fish density by zooplankton biomass and zooplankton biomass by phytoplankton biomass raised to 23% and 14%, respectively. Less than 1% of the variation in larval fish density could be explained by phytoplankton biomass when SST was below 25°C, while 21% could be explained by phytoplankton biomass when SST was higher.
Figure 3

Relationships between the abundance/biomass of different trophic levels. (a) Larval fish abundance versus zooplankton biomass, (b) zooplankton biomass versus phytoplankton biomass, and (c) larval fish abundance versus phytoplankton biomass when SST ≤ 25°C and when SST > 25°C. The trend lines were based on generalized linear mixed models.


Our study suggested that the bottom-up control regulates the trophic structure in the East China Sea, and this control is mediated by temperature (Table 2, Figure 3). The results of multiple GLMMs showed that temperature co-acted with resource availability in determining the trophic structure when SST was below 25°C (Table 2). Correspondingly, phytoplankton biomass alone was a poor predictor for zooplankton biomass, and likewise, zooplankton biomass alone was a poor predictor for larval fish density (Figure 3). By contrast, while SST was above 25°C, the bottom-up process dominated the regulation of trophic structure; thus, the trophic levels were well coupled and the fish production could be better predicted by primary production.

It is worthy to clarify the effects of temperature on trophic structure in the ECS. We found that the relationship between phytoplankton biomass and temperature showed an abrupt change at SST of about 25°C (Table 1, Figure 2). Such a change may be related to the spatiotemporal variation of the temperature and nutrient conditions in the system. Specifically, the temperature of the coastal area affected by the Changjiang discharge (the main source of nutrient input into the ECS) is relatively low and changes seasonally (SST from 11°C to 26°C; Gong et al. 2003). On the contrary, the oligotrophic Kuroshio Current bordering the ECS is warm and relatively stable in temperature (SST from 20°C to 30°C). That is, the nutrient level is negatively correlated with water temperature in the ECS, and the decline is particularly sharp when the shelf water encounters the Kuroshio Current, on average at SST around 25°C. It is well known that SST is a reasonable proxy for nutrient status in the ECS (Gong et al. 2003). Thus, our finding of the relationship between phytoplankton biomass and temperature (Figure 2) basically signals the bottom-up effects of nutrient on phytoplankton, which is mediated by the hydrography of ECS. Indeed, the phytoplankton biomass also showed a significant relationship with nutrients (Table 1).

The change of the relationship between fish abundance and SST at about 25°C (Table 1, Figure 2) may be related to the physiology of fish, the change in fish assemblage, and food availability. When SST was below 25°C, the larval fish abundance was positively correlated with SST. This observed relationship could be underlain by the fact that fish assemblage changes along the temperature gradient (Hsieh et al. 2011; Lefébure et al. 2013) and different fish species may have different physiological responses. Note, however, that zooplankton biomass also play some roles when SST is below 25°C (Table 2, Figure 3a). When SST was above 25°C, the larval fish abundance decreased with increasing temperature. The change of fish assemblage along the temperature gradient could not provide a satisfactory explanation for this unexpected finding, as SST was not a significant predictor in the multivariate GLMMs (Table 2). The observed relationship between fish abundance and SST in warm waters could be best explained by food availability. Specifically, in the ECS, the biomass of zooplankton decreases with increasing water temperature, as a result of decreasing phytoplankton biomass through the bottom-up control. At SST above 25°C, the larval fish abundance is limited by zooplankton abundance and the increase of temperature exhibits no beneficial effects to the larval fish abundance. Our analyses are consistent with the results of Chen et al. (2014), which suggested that the abundance of larval fish in the ECS was mainly affected by SST in the cool season and by food availability in the warm season.

Our finding that the bottom-up control regulates the trophic structure in the East China Sea (Table 2, Figure 3) is consistent with the patterns found along the continental margin of western North America (Ware and Thomson 2005) and with the study using the cross-system comparative method (Iverson 1990). However, our finding is in contrast with some studies in the over-exploited ecosystems of northwest Atlantic (Frank et al. 2005), the Black Sea (Daskalov et al. 2007), and the Baltic Sea (Casini et al. 2008; Mollmann et al. 2008; Casini et al. 2009), where the top-down process and trophic cascade were found to control the trophic structure after the removal of top predators. Despite being heavily exploited (Chen et al. 1997; Liu and Zhan 1999), the top-down control did not dominate the ECS ecosystem in the trophic levels we examined. The current extent of exploitation and the more diverse community of the subtropical ECS compared to the other studied over-exploited systems could be part of the reason, as simpler food webs are more likely to be governed by top-down regulation (Bascompte et al. 2005; Frank et al. 2007). The regulating mechanism of the trophic structure may nevertheless change over time (Casini et al. 2009; Davis et al. 2010). Our results provide the scenario in the ECS between 2007 and 2010. It is worth further monitoring that, under the continuing natural and artificial changes into its environment and biological communities, whether the regulating mechanism in the ECS may alter.

We found that the Z:P ratio decreased with increasing PO4 concentration (Table 2). Similar results have been found in phosphate-limited environments and could indicate a cascade effect that regulates trophic transfer efficiency (Jeppesen et al. 1997, 2003; Dickman et al. 2008). Increasing concentration of PO4 may boost the growth of fish via high food quality. This would result in a high predation rate of fish on zooplankton, which then further suppresses the grazing pressure of zooplankton on phytoplankton. Whether this is the actual mechanism operating in the ECS, though, remains to be further investigated.

We recognize that this study was based on a simplified tri-trophic food chain, whereas the real food web is much more complicated (Bascompte and Melian 2005). For example, the microbial loop may provide mesozooplankton with additional food sources (del Giorgio and Gasol 1995). The microzooplankton may have significant grazing impact on phytoplankton as well as contribute to the diet of mesozooplankton (Calbet 2008). However, we currently do not have the data to evaluate the roles of the microbial loop and microzooplankton. The current correlation analyses, nevertheless, reveal interesting information that may provide a first step for further investigation into the mechanisms.


In summary, our study suggested that the bottom-up control is the prevailing mechanism regulating the trophic structure of the East China Sea. We also demonstrated how temperature and nutrient status influence the abundance of each trophic level. Our study could offer a base in further understating how eutrophication and temperature change may influence the ecosystem of the East China Sea.



This research is supported by the National Taiwan University and National Science Council, Taiwan. We thank the crews of the R/V ‘Ocean Researcher I and II’ for their assistance in the sampling.

Authors’ Affiliations

Institute of Oceanography, National Taiwan University
Ocean Data Bank, Ministry of Science and Technology
Center of Excellence for the Oceans, National Taiwan Ocean University
Institute of Ecology and Evolutionary Biology, National Taiwan University


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